Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015889929.1_cds_XP_016444619.1_39657
CDS Infomation

[gene=LOC107769880] [db_xref=GeneID:107769880] [protein=vam6/Vps39-like protein] [protein_id=XP_016444619.1] [location=join(50757..51198,51828..52039,52410..52541,52642..52785,53678..53809,54129..54233,54868..55197,55614..55835,56050..56292,56806..57255,58099..58197,58463..58663)] [gbkey=CDS]
Sequence

ATGGTGCACAGTGCCTACGATTCCTTCGAACTCCTCAATAATTGTCCCACAAAAATCGAT
GCCATCGAATCATACGGCTCAAATTTACTCATCGCCTGTTCCGATGGATCGCTCCGCGTT
TACGGTCCGGAATCCGCTGTTTCCGATCAATCTCCGCCGTCCGATTTCCACTCCCAAACC
TTAGGGCTTCATCAAGAGCGATACGTGCTTGAAAGAAGTGTGAATGGATTCTCCAGAAGA
CAAATGCTGGCTATGGAAGTTCTCGTATCGCGAGAACTTCTGCTTTCTCTCTCGGAGTCC
ATAGCGTTCCATCGGTTGCCCAATTTGGAGACTTTGGCTGTGATAACTAAGGCTAAAGGT
GCAAATGTATACTCATGGGATGATAAAAGAGGGTTTCTTTGCTTCGGCAGGCAAAAGAGA
GTTTGTATTTTCAGACATGACGGGGGAAGGGGATTTGTGGAGGTGAAAGAATTCGGGGTC
CCTGACACAGTCAAGTCGATGTCATGGTGTGGTGAGAATATTTGCTTGGGGATTAGAAGA
GAGTACATGATATTGAATACCACCAATGGTGCATTGTCTGAGGTGTTTCCTTCAGGGAGG
ATCGCCCCACCTCTTGTGGTGTCTCTTCCCTCCGGAGAACTTCTTTTGGGAAAGGATAAT
ATTGGTGTCTTAGTTGACCAAAATGGCAAGTTGATTCAAGAGGGGAGGGTTTGTTGGTCC
GAGGCTCCTGCAGCTGTTGTTATTCAGAATCCCTATGCAATAGGTCTCTTACCACGGCAT
GTTGAGATACGTTCTCTTCGTGTTCCTTATCCTTTAATTCAAACAGTTGTCCTTCGGAAT
GTTCGCCGTGTTGTTCGAAGCAACAATGCTGTTATTGTTGCTCTTGATTATTCTGTTTTT
GGCTTTTTTCCTGTTCCTCTGGGTGCACAGATTGTACAACTAACAGCATCTGGAAACTTT
GAGGAAGCCTTGGCTTTGTGCAAATTGCTACCGCCAGAAGATTCAAGTCTTAGAACTGCA
AAGGAGCAATCGATTCATATAAGGTCATTCCCCCGACCCTGCCTGAATGTCTANGCCACA
GCTGAGGGAACTGAGGAGGTGGTTTCAGATGCTGTAGGAGATAATTTCATTTCCTATGGA
ACTAGCCGGTCCAAAAAACCAACCAAGGGAAGAACCCATGCTCCAATCACTTCCGTCGCT
AGGGATATGGCTGCTATTCTGGACACTGCACTTCTTCAAGCTCTACTTTTAACTGGACAG
TCCTCAGCTGCTACAGATTTTCTGAAAGCCCTCAACTATTGTGATGTGAAAATATGCCAG
GAGTTCCTGCAGAAAAGAATGCAGTATGCTTGTCTGCTAGAACTTTATAGAAGCAACTCA
ATGCATCGTGAAGCACTGAAACTTCTCCATCAATTGGTAGAAGAGTCGAAGTCAGAGCAA
ATTCCTTTAGAGCTTTCAACGAAATTCAAGCCTGATATGATCATTGAATATCTCAAACCC
CTTTGTGCAACAGACCCCATGCTTGTCCTGGAGTTCTCACTGCCTGTTCTTGAAAGCTGT
CCTATGCAAACCATTGAGCTATTCTTGTCTGGTAACATTCCAGCAGACTTGGTGAACTCT
TACTTAAAACAGCATGCTCCAAACATGCAGGCGACATATCTGGAACTCATGCTTGCCATG
AATGAAAATAGCATCTCCAGGAATCTGCAGAATGAAATGGTGCAAATTTATCTCTCGGAA
GTGCTTGATTTGTATGCTGAACTTAACACCCAGCAAAAGTGGGATGAGAAAACATATTCT
CCGACAAGGAAAAAGCTATTGTCTGCTTTGGAGAGTATCTCTGGATATAACCCAGAGGTG
CTGCTGAAGAGACTTCCACCAGATGCTTTGTATGAAGAACGAGCAGTTCTGTTGGGGAAA
ATGAATCAACATGAACTTGCGTTGTCTATTTATGTGCACAAGCTTCACGTTCCTGAACTT
GCACTGTCCTATTGTGATCGGGTGTATGATTCAGGACTTCAACAACATTCAGCAAAATCA
TATGGAAACATTTACCTGACTCTACTGCAAATCTATCTAAATCCTACGAAGACAACGAAA
AATTTTGAGAAGAAAATTACTAATCTGGTATCATCTCAGAGCCCTGGGATTCCAAAAGTT
GGTTCAGGAACTACAGCAAAGATAAAAGGAGGCCGCTCCAAGAAAATTGCTGAAATTGAG
GGCGCTGAGGACATTCGATTCAGTCCAAGTGGCACTGACAGTGGTAGGAGTGATGGAGAT
ATGGAAGATGCTGCTGAAGAAGGAGATTCTACTATTATGCTAGATCAAGTTCTTGATCTT
TTGAGCAGAAGGTGGGATCGGATCCATGGGGCCCAAGCTCTGAAACTACTGCCAAGGGAT
ACGAAGCTACAGAATTTGCTTCCATTTCTTGGACCTCTTCTGAGGAAATCCAGTGAAGCG
TATCGGAACTTTTCTGTGATAAAAAGCTTGAGAGAAAGTGAAAACCTACAGGTCAAAGAT
GAACTGTATAACCAAAGAAAGGCAGTCTTGAAGATCACAAGTGATAGCTTGTGTTCTCTC
TGCAACAAGAAGATCGGCACCAGTGTCTTTGCAGTCTATCCTAATGGCAAGACAATTGTG
CACTTTGTTTGCTTTAGAGATTCACAGAATATGAAGGCAGTTGGAAGAGGCTCTCAGATG
AGGAAAAGATGA

Peptide Sequence

PEP ID

XP_016444619.1
PEP Infomation

PREDICTED: vam6/Vps39-like protein [Nicotiana tabacum]
Sequence

MVHSAYDSFELLNNCPTKIDAIESYGSNLLIACSDGSLRVYGPESAVSDQSPPSDFHSQT
LGLHQERYVLERSVNGFSRRQMLAMEVLVSRELLLSLSESIAFHRLPNLETLAVITKAKG
ANVYSWDDKRGFLCFGRQKRVCIFRHDGGRGFVEVKEFGVPDTVKSMSWCGENICLGIRR
EYMILNTTNGALSEVFPSGRIAPPLVVSLPSGELLLGKDNIGVLVDQNGKLIQEGRVCWS
EAPAAVVIQNPYAIGLLPRHVEIRSLRVPYPLIQTVVLRNVRRVVRSNNAVIVALDYSVF
GFFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRTAKEQSIHIRSFPRPCLNVXAT
AEGTEEVVSDAVGDNFISYGTSRSKKPTKGRTHAPITSVARDMAAILDTALLQALLLTGQ
SSAATDFLKALNYCDVKICQEFLQKRMQYACLLELYRSNSMHREALKLLHQLVEESKSEQ
IPLELSTKFKPDMIIEYLKPLCATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNS
YLKQHAPNMQATYLELMLAMNENSISRNLQNEMVQIYLSEVLDLYAELNTQQKWDEKTYS
PTRKKLLSALESISGYNPEVLLKRLPPDALYEERAVLLGKMNQHELALSIYVHKLHVPEL
ALSYCDRVYDSGLQQHSAKSYGNIYLTLLQIYLNPTKTTKNFEKKITNLVSSQSPGIPKV
GSGTTAKIKGGRSKKIAEIEGAEDIRFSPSGTDSGRSDGDMEDAAEEGDSTIMLDQVLDL
LSRRWDRIHGAQALKLLPRDTKLQNLLPFLGPLLRKSSEAYRNFSVIKSLRESENLQVKD
ELYNQRKAVLKITSDSLCSLCNKKIGTSVFAVYPNGKTIVHFVCFRDSQNMKAVGRGSQM
RKR

Transcript Sequence

Gene sequence data has not been registered.